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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9966415_9967077_R

Intron Information:

Intron Rank:
47
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9966415 - 9967077
Intron Length:
663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAA
U12 Branch Point Sequence:
CAAGGCTTAACG
Flanking Amino Acid:
DPANLDSEAKIIQQAGQVWF
Intron Amino Acid Position:
1951

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1
75
38.1
Major BPS
73
0.57
1.2
77.7
37.1
Major PPT
79.4
0.66
0.8
73.3
31.8
Minor 5ss
38.2
-1.3
3.1
49.4
46.8
Minor BPS
49.5
-0.1
2
53.04
47.3

Associated Gene:

Gene:
ACACA
Ensembl Gene ID:
ENSAPLG00000006678
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033706
9948784 - 10062330
113547
ENSAPLT00000039117
9947556 - 10064568
117013
ENSAPLT00000019744
9947556 - 10049194
101639
ENSAPLT00000039017
9947556 - 10062330
114775
ENSAPLT00000007210
9949008 - 10051639
102632
ENSAPLT00000038991
9948784 - 10062330
113547
ENSAPLT00000036264
9947556 - 10062330
114775