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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9984438_9984880_R

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9984438 - 9984880
Intron Length:
443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATCCCC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAA
U12 Branch Point Sequence:
TTTTTTTTTAAG
Flanking Amino Acid:
AYDSIITINLVTCRAIGIGA
Intron Amino Acid Position:
1761

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
55.2
42.1
Major BPS
62.4
0.31
1
64
32.1
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
39.3
-1.2
3
49.4
40.8
Minor BPS
56.3
0.05
1.8
67.7
39.9

Associated Gene:

Gene:
ACACA
Ensembl Gene ID:
ENSAPLG00000006678
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036264
9947556 - 10062330
114775
ENSAPLT00000033706
9948784 - 10062330
113547
ENSAPLT00000039117
9947556 - 10064568
117013
ENSAPLT00000019744
9947556 - 10049194
101639
ENSAPLT00000039017
9947556 - 10062330
114775
ENSAPLT00000007210
9949008 - 10051639
102632
ENSAPLT00000038991
9948784 - 10062330
113547