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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9985847_9986184_R

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9985847 - 9986184
Intron Length:
338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGAGG
5'SS Class:
major
3'SS Sequence:
TTTTTCCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGAGAT
U12 Branch Point Sequence:
TTTTCCCTACAG
Flanking Amino Acid:
AWEDPDDPYKGYKYLYLTPQ
Intron Amino Acid Position:
1688

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
67.1
44
Major BPS
55.2
0.13
1.2
52.5
43.3
Major PPT
90.4
0.91
0.6
85.1
22.6
Minor 5ss
33.4
-1.9
3.2
40
40.1
Minor BPS
53.3
-0
2.1
69.58
43.3

Associated Gene:

Gene:
ACACA
Ensembl Gene ID:
ENSAPLG00000006678
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036264
9947556 - 10062330
114775
ENSAPLT00000033706
9948784 - 10062330
113547
ENSAPLT00000039117
9947556 - 10064568
117013
ENSAPLT00000019744
9947556 - 10049194
101639
ENSAPLT00000039017
9947556 - 10062330
114775
ENSAPLT00000007210
9949008 - 10051639
102632
ENSAPLT00000038991
9948784 - 10062330
113547