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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9997908_9999870_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9997908 - 9999870
Intron Length:
1963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGCTTC
5'SS Class:
major
3'SS Sequence:
TTTTGTGCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
TAAATCATAACT
Flanking Amino Acid:
KEVTDSRTAQIMFQAYGDKQ
Intron Amino Acid Position:
1497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
0.9
71
35.7
Major BPS
71.6
0.54
1
72
33.1
Major PPT
82.8
0.74
0.9
77.3
37
Minor 5ss
49.1
-0.1
2.7
66.9
44.7
Minor BPS
59.8
0.39
1.7
76.02
39.7

Associated Gene:

Gene:
ACACA
Ensembl Gene ID:
ENSAPLG00000006678
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033706
9948784 - 10062330
113547
ENSAPLT00000039117
9947556 - 10064568
117013
ENSAPLT00000019744
9947556 - 10049194
101639
ENSAPLT00000039017
9947556 - 10062330
114775
ENSAPLT00000007210
9949008 - 10051639
102632
ENSAPLT00000038991
9948784 - 10062330
113547
ENSAPLT00000036264
9947556 - 10062330
114775