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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10001763_10002257_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10001763 - 10002257
Intron Length:
495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAGAA
5'SS Class:
major
3'SS Sequence:
TCTTCTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TCTCTCCTAACA
Flanking Amino Acid:
ISVHGTFSSNSSSCIPSRFM
Intron Amino Acid Position:
702

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
71.3
34.5
Major BPS
72
0.55
1
71.8
31.4
Major PPT
92
0.94
0.6
87.8
22.1
Minor 5ss
35.3
-1.7
3.4
46.9
48.4
Minor BPS
62.1
0.38
1.7
73.2
38.4

Associated Gene:

Gene:
LAMA5
Ensembl Gene ID:
ENSAPLG00000010163
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010775
9985841 - 10022760
36920
ENSAPLT00000021929
9985841 - 10022668
36828
ENSAPLT00000021580
9985841 - 10022668
36828