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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10002460_10002881_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10002460 - 10002881
Intron Length:
422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCAGCA
5'SS Class:
major
3'SS Sequence:
TGTTTGGGGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTTATT
Flanking Amino Acid:
AKLILLQQPQDAVVFNSRIQ
Intron Amino Acid Position:
770

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.1
0.4
1.2
59.7
39.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
60.4
0.24
1.2
53.8
49.8
Minor 5ss
34.9
-1.7
3.6
48.1
47.6
Minor BPS
55.8
0.26
1.9
77.76
38.8

Associated Gene:

Gene:
LAMA5
Ensembl Gene ID:
ENSAPLG00000010163
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021929
9985841 - 10022668
36828
ENSAPLT00000021580
9985841 - 10022668
36828
ENSAPLT00000010775
9985841 - 10022760
36920