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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10003009_10003210_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10003009 - 10003210
Intron Length:
202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATGA
5'SS Class:
strong_major
3'SS Sequence:
GTTGCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGCAA
U12 Branch Point Sequence:
AATGCGAGACCA
Flanking Amino Acid:
VLINGGRIWQGQTNATFCPH
Intron Amino Acid Position:
812

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.8
33
Major BPS
53.2
0.08
1.4
65.6
41.4
Major PPT
83.8
0.76
0.8
80.8
36.8
Minor 5ss
31.9
-2.1
3
38.8
46.3
Minor BPS
36.2
-1
2.3
48.75
41.4

Associated Gene:

Gene:
LAMA5
Ensembl Gene ID:
ENSAPLG00000010163
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021929
9985841 - 10022668
36828
ENSAPLT00000021580
9985841 - 10022668
36828
ENSAPLT00000010775
9985841 - 10022760
36920