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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10003686_10003962_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10003686 - 10003962
Intron Length:
277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGGCTT
5'SS Class:
major
3'SS Sequence:
CCTTCCCCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAGTGAC
U12 Branch Point Sequence:
CATGCCAGAGTG
Flanking Amino Acid:
SSCGINSFYINPSTSSRFCR
Intron Amino Acid Position:
897

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
72.3
38.9
Major BPS
48.3
-0.1
1.3
40.8
41.4
Major PPT
79.9
0.67
0.7
73.4
24.9
Minor 5ss
33
-1.9
3.5
47.7
42.3
Minor BPS
40
-0.8
1.9
42.3
42.7

Associated Gene:

Gene:
LAMA5
Ensembl Gene ID:
ENSAPLG00000010163
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021929
9985841 - 10022668
36828
ENSAPLT00000021580
9985841 - 10022668
36828
ENSAPLT00000010775
9985841 - 10022760
36920