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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10007833_10008057_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10007833 - 10008057
Intron Length:
225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGCACC
5'SS Class:
major
3'SS Sequence:
CTTGTCGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTTCAC
U12 Branch Point Sequence:
TTCCCGTTCACC
Flanking Amino Acid:
CPCPLSVASNNFAVGCVRKG
Intron Amino Acid Position:
1405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
68.6
36.4
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
79.1
0.66
0.9
72.8
37.5
Minor 5ss
36.9
-1.5
2.9
44.8
36.8
Minor BPS
48.7
-0.1
2.4
67.59
44.2

Associated Gene:

Gene:
LAMA5
Ensembl Gene ID:
ENSAPLG00000010163
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021929
9985841 - 10022668
36828
ENSAPLT00000021580
9985841 - 10022668
36828
ENSAPLT00000010775
9985841 - 10022760
36920