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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10008139_10008576_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10008139 - 10008576
Intron Length:
438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGTGTTTTAACT
Flanking Amino Acid:
KPGYAGPNCERCAPGYYGNP
Intron Amino Acid Position:
1432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.2
43
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
82
0.72
0.9
73.6
41.8
Minor 5ss
33.3
-1.9
3.7
47.2
48.2
Minor BPS
72.4
0.78
1.3
83.79
37.4

Associated Gene:

Gene:
LAMA5
Ensembl Gene ID:
ENSAPLG00000010163
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021580
9985841 - 10022668
36828
ENSAPLT00000010775
9985841 - 10022760
36920
ENSAPLT00000021929
9985841 - 10022668
36828