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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10010564_10011464_F

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10010564 - 10011464
Intron Length:
901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGACAC
5'SS Class:
major
3'SS Sequence:
TTTTGTGTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAC
U12 Branch Point Sequence:
TTACACTTGAGC
Flanking Amino Acid:
TQDLNALQHKMTMTHRKANH
Intron Amino Acid Position:
1734

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
59.7
39.7
Major BPS
64.9
0.37
0.9
55.4
32.3
Major PPT
82.6
0.73
0.9
81.2
36.5
Minor 5ss
32.6
-2
3.4
42
39
Minor BPS
50.9
0.01
1.9
65.35
40

Associated Gene:

Gene:
LAMA5
Ensembl Gene ID:
ENSAPLG00000010163
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021929
9985841 - 10022668
36828
ENSAPLT00000021580
9985841 - 10022668
36828
ENSAPLT00000010775
9985841 - 10022760
36920