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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10013377_10013462_F

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10013377 - 10013462
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGACCTT
5'SS Class:
major
3'SS Sequence:
TCTCTGTGTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TCGCTCCTAACT
Flanking Amino Acid:
LNRNNLEESQQKSRELQKQY
Intron Amino Acid Position:
1894

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
66
45.4
Major BPS
72
0.55
1
71.8
31.4
Major PPT
76.3
0.59
1
68.5
42.1
Minor 5ss
41.8
-0.9
3.6
64.4
47
Minor BPS
58
0.33
1.7
73.62
43.1

Associated Gene:

Gene:
LAMA5
Ensembl Gene ID:
ENSAPLG00000010163
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021580
9985841 - 10022668
36828
ENSAPLT00000010775
9985841 - 10022760
36920
ENSAPLT00000021929
9985841 - 10022668
36828