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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10013809_10013982_F

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10013809 - 10013982
Intron Length:
174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCAACACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCAAC
U12 Branch Point Sequence:
TCTTCCAACACA
Flanking Amino Acid:
LLSELAKNLSSIIQGTNQDG
Intron Amino Acid Position:
1984

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
61.9
0.3
1.2
70.7
33.5
Major PPT
71.7
0.49
0.9
66.1
33.5
Minor 5ss
32.5
-2
3.3
47.4
48
Minor BPS
47.8
-0.1
2.3
67.8
44.7

Associated Gene:

Gene:
LAMA5
Ensembl Gene ID:
ENSAPLG00000010163
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021929
9985841 - 10022668
36828
ENSAPLT00000021580
9985841 - 10022668
36828
ENSAPLT00000010775
9985841 - 10022760
36920