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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10014125_10014410_F

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10014125 - 10014410
Intron Length:
286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTGCT
5'SS Class:
major
3'SS Sequence:
GTTTTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCGAGAC
U12 Branch Point Sequence:
TTTTTTTTACAG
Flanking Amino Acid:
ADEAAGEALMNVISENLGAI
Intron Amino Acid Position:
2032

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
71.7
38.2
Major BPS
46.6
-0.2
1.2
40.3
40
Major PPT
92.4
0.95
0.7
87.5
30
Minor 5ss
34.4
-1.8
3.4
47.2
43.5
Minor BPS
57.9
0.11
1.8
67.62
40.4

Associated Gene:

Gene:
LAMA5
Ensembl Gene ID:
ENSAPLG00000010163
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021929
9985841 - 10022668
36828
ENSAPLT00000021580
9985841 - 10022668
36828
ENSAPLT00000010775
9985841 - 10022760
36920