Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10014514_10014632_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10014514 - 10014632

Intron Length:

119

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGAGAA

5'SS Class:

strong_major

3'SS Sequence:

TCATTAATTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CATTAAT

U12 Branch Point Sequence:

GTTTCATTAATT

Flanking Amino Acid:

VMREQRKLNGAIKGTLQTAK

Intron Amino Acid Position:

2066

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.8

76.5

26.8

Major BPS

79.4

0.73

0.9

79.6

29.1

Major PPT

0.61

0.9

70.8

38.6

Minor 5ss

24.3

-3

3.1

28.7

43.6

Minor BPS

76.8

0.92

1.5

90.31

33.1

Associated Gene:

Gene:

LAMA5

Ensembl Gene ID:

ENSAPLG00000010163

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021929

9985841 - 10022668

36828

ENSAPLT00000021580

9985841 - 10022668

36828

ENSAPLT00000010775

9985841 - 10022760

36920