Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10015044_10015265_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10015044 - 10015265

Intron Length:

222

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGTTCT

5'SS Class:

strong_major

3'SS Sequence:

CCTCTAATTCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTAAT

U12 Branch Point Sequence:

GCTCCTCTAATT

Flanking Amino Acid:

NRAVQDAKKSVSSLESTIPL

Intron Amino Acid Position:

2164

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

0.8

79.3

29.7

Major BPS

82.2

0.8

0.9

81.6

Major PPT

75.8

0.58

0.9

66.2

38.5

Minor 5ss

37.5

-1.4

2.9

47.5

42.3

Minor BPS

55.3

0.24

1.7

70.73

40.5

Associated Gene:

Gene:

LAMA5

Ensembl Gene ID:

ENSAPLG00000010163

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021580

9985841 - 10022668

36828

ENSAPLT00000010775

9985841 - 10022760

36920

ENSAPLT00000021929

9985841 - 10022668

36828