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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10020536_10020767_F

Intron Information:

Intron Rank:
64
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10020536 - 10020767
Intron Length:
232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCAGA
5'SS Class:
major
3'SS Sequence:
TTGGTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
CAGCACTGACCT
Flanking Amino Acid:
DKYRDRRWHTVFFGRDQHRA
Intron Amino Acid Position:
2912

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
65.3
42.2
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
80
0.67
0.9
73.7
36.9
Minor 5ss
33.8
-1.8
2.9
40.4
45.5
Minor BPS
43.8
-0.3
1.9
56.65
45

Associated Gene:

Gene:
LAMA5
Ensembl Gene ID:
ENSAPLG00000010163
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021929
9985841 - 10022668
36828
ENSAPLT00000021580
9985841 - 10022668
36828
ENSAPLT00000010775
9985841 - 10022760
36920