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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10021201_10021314_F

Intron Information:

Intron Rank:
66
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10021201 - 10021314
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACCAGCC
5'SS Class:
major
3'SS Sequence:
ATTTCATTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CCCTTCTCACCA
Flanking Amino Acid:
FAAEGGSISLADAVATGQDL
Intron Amino Acid Position:
3016

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.2
58.3
42
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81
0.7
0.8
78.7
34.1
Minor 5ss
36.2
-1.6
3.5
51.7
45
Minor BPS
47.2
-0.2
1.8
54.1
45.1

Associated Gene:

Gene:
LAMA5
Ensembl Gene ID:
ENSAPLG00000010163
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021929
9985841 - 10022668
36828
ENSAPLT00000021580
9985841 - 10022668
36828
ENSAPLT00000010775
9985841 - 10022760
36920