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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10021633_10022351_F

Intron Information:

Intron Rank:
68
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10021633 - 10022351
Intron Length:
719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTCCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
CTGACTTTGATT
Flanking Amino Acid:
LCDGQWHTITVTKWKNVLQL
Intron Amino Acid Position:
3090

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
36.2
Major BPS
84
0.85
0.9
75
39.9
Major PPT
73
0.52
1
71.8
37.7
Minor 5ss
30.7
-2.2
3.2
38
46.8
Minor BPS
60.9
0.42
1.3
70.86
41.1

Associated Gene:

Gene:
LAMA5
Ensembl Gene ID:
ENSAPLG00000010163
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021929
9985841 - 10022668
36828
ENSAPLT00000021580
9985841 - 10022668
36828
ENSAPLT00000010775
9985841 - 10022760
36920