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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10022472_10022602_F

Intron Information:

Intron Rank:
69
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10022472 - 10022602
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTGGTTTTATTT
Flanking Amino Acid:
KATFYLGGQPAATEQASTAP
Intron Amino Acid Position:
3130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
86
0.81
0.8
77.9
36.6
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
53.1
0.18
1.7
70.24
42.1

Associated Gene:

Gene:
LAMA5
Ensembl Gene ID:
ENSAPLG00000010163
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010775
9985841 - 10022760
36920