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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10024427_10025123_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10024427 - 10025123
Intron Length:
697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTACGTACC
5'SS Class:
major
3'SS Sequence:
ATTTAACTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
ATGTATTTAACT
Flanking Amino Acid:
AEAVDAANKGDVEAFAKAMQ
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
70.3
40.3
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
73.6
0.53
0.9
64.1
42
Minor 5ss
36.4
-1.5
2.9
47.4
41.2
Minor BPS
71.5
0.75
1.4
83.28
37.7

Associated Gene:

Gene:
ADRM1
Ensembl Gene ID:
ENSAPLG00000011362
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011837
10024202 - 10030714
6513