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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10026425_10026699_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10026425 - 10026699
Intron Length:
275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCGGTG
5'SS Class:
major
3'SS Sequence:
ATTTTCTTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGTTCAT
U12 Branch Point Sequence:
TGTAGTCTAACA
Flanking Amino Acid:
NVPSGAGGQQVDLATVLTPE
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.3
59
43.5
Major BPS
72.4
0.56
1.2
75
39.9
Major PPT
80.7
0.69
0.8
74.1
36
Minor 5ss
37
-1.5
3.9
54.5
49.7
Minor BPS
48.3
-0.1
2.1
65.58
40.6

Associated Gene:

Gene:
ADRM1
Ensembl Gene ID:
ENSAPLG00000011362
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011837
10024202 - 10030714
6513