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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10026930_10027149_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10026930 - 10027149
Intron Length:
220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGCGC
5'SS Class:
major
3'SS Sequence:
ATTGTCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AGGGAATTAATT
Flanking Amino Acid:
GGPPTSSSSSSSRSQSAAVT
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
60.9
40.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
82.8
0.74
0.9
73.9
41.1
Minor 5ss
29.7
-2.3
3.5
41.4
45.3
Minor BPS
47.1
-0.1
1.8
61.36
42.3

Associated Gene:

Gene:
ADRM1
Ensembl Gene ID:
ENSAPLG00000011362
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011837
10024202 - 10030714
6513