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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10029571_10029985_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10029571 - 10029985
Intron Length:
415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGTCC
5'SS Class:
major
3'SS Sequence:
TTTTTGTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAGAA
U12 Branch Point Sequence:
TGTTTCAGAATG
Flanking Amino Acid:
SGGHELSALGGEGGLQSLLG
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
61
38.8
Major BPS
64.9
0.37
1
61
37.5
Major PPT
89.4
0.89
0.7
88.9
28.2
Minor 5ss
36.3
-1.6
3.5
51
45.8
Minor BPS
50.8
-0.1
1.8
61.82
40

Associated Gene:

Gene:
ADRM1
Ensembl Gene ID:
ENSAPLG00000011362
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011837
10024202 - 10030714
6513