About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10048002_10048249_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10048002 - 10048249
Intron Length:
248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCAATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCAAT
U12 Branch Point Sequence:
TTTTTTCCAATT
Flanking Amino Acid:
EIQENGIKRHRTSLPAPMFS
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
71.8
0.54
1.2
79
32.5
Major PPT
80.8
0.69
0.8
74
34.3
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
55.8
0.26
1.8
80.24
36

Associated Gene:

Gene:
OSBPL2
Ensembl Gene ID:
ENSAPLG00000011733
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040567
10033902 - 10066443
32542
ENSAPLT00000012269
10034266 - 10052897
18632