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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10048398_10054125_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10048398 - 10054125
Intron Length:
5728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
GTTTTTTCTACA
Flanking Amino Acid:
SEEEFYDAVTGFDSDNSSGD
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
77.5
32.9
Major BPS
75.1
0.62
1
65.6
41
Major PPT
89.4
0.89
0.7
84.3
30.8
Minor 5ss
28.5
-2.5
3.2
31.7
42.6
Minor BPS
51.2
0.03
1.8
67.63
38.5

Associated Gene:

Gene:
OSBPL2
Ensembl Gene ID:
ENSAPLG00000011733
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040567
10033902 - 10066443
32542