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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10111437_10111624_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10111437 - 10111624
Intron Length:
188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCACTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTGCAT
U12 Branch Point Sequence:
TGTCCCTTCACT
Flanking Amino Acid:
GANGASVYVKVPVGTSVKED
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
66.2
0.4
1.4
77.4
37.3
Major PPT
69.5
0.44
1
72
31.8
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
71
0.74
1.8
86.57
38.9

Associated Gene:

Gene:
MTG2
Ensembl Gene ID:
ENSAPLG00000012536
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013057
10108854 - 10113774
4921