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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10111741_10112332_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10111741 - 10112332
Intron Length:
592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TTTTGCTTTACA
Flanking Amino Acid:
GGDGGHVVLKADQQMKSLSS
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
72.3
37.6
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
89.7
0.89
0.7
84
31
Minor 5ss
33.4
-1.9
3.6
46.6
48.7
Minor BPS
67.1
0.53
2.1
83.52
37

Associated Gene:

Gene:
MTG2
Ensembl Gene ID:
ENSAPLG00000012536
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013057
10108854 - 10113774
4921