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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10112481_10113624_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10112481 - 10113624
Intron Length:
1144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
ATCCTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTCAT
U12 Branch Point Sequence:
CAAACCTCATCC
Flanking Amino Acid:
QKRAISERKLTRYFVDHRRV
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.6
31.8
Major BPS
73.5
0.58
1
73.6
32.5
Major PPT
82.5
0.73
0.8
76.8
31.1
Minor 5ss
35.5
-1.6
3.3
47.5
42.3
Minor BPS
46.8
-0.2
1.8
53.86
43.2

Associated Gene:

Gene:
MTG2
Ensembl Gene ID:
ENSAPLG00000012536
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013057
10108854 - 10113774
4921