About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10125519_10126986_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10125519 - 10126986
Intron Length:
1468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
CCTTATTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TGCTCCTTATTC
Flanking Amino Acid:
QSKGKTAECTQYQQILHRNL
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
81
32.8
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
78.2
0.63
0.8
73.2
31.3
Minor 5ss
38.4
-1.3
3
57
41.2
Minor BPS
65.6
0.47
1.6
70.84
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020842
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027243
10125302 - 10127063
1762