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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10142831_10144057_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10142831 - 10144057
Intron Length:
1227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGCGTATG
5'SS Class:
major
3'SS Sequence:
CTCCTGCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAC
U12 Branch Point Sequence:
AGTGTTTAAACT
Flanking Amino Acid:
QVPQSNTKTNGNRRTRNRSR
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
69.3
42.9
Major BPS
72.4
0.56
1
79.3
29.5
Major PPT
79.6
0.67
0.8
76.2
32.4
Minor 5ss
33.3
-1.9
3
42.4
44.5
Minor BPS
52.7
0.16
1.7
69.96
41.5

Associated Gene:

Gene:
LSM14B
Ensembl Gene ID:
ENSAPLG00000013203
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046733
10141981 - 10151433
9453