About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10173046_10191046_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10173046 - 10191046
Intron Length:
18001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTAAT
U12 Branch Point Sequence:
TCTTTTTTAACA
Flanking Amino Acid:
TNIQNFQLPPGMVLVRSENG
Intron Amino Acid Position:
646

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
69
0.47
1.2
69.9
35.3
Major PPT
86.9
0.83
0.8
84.4
29
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
80
0.94
1
82.25
33.1

Associated Gene:

Gene:
TAF4
Ensembl Gene ID:
ENSAPLG00000013454
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014040
10169130 - 10206025
36896