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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10191688_10193455_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10191688 - 10193455
Intron Length:
1768

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCCG
5'SS Class:
strong_major
3'SS Sequence:
GTATTCTCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AGTATAATAATT
Flanking Amino Acid:
TTLQRPPVVQPQIVLGGTAQ
Intron Amino Acid Position:
742

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
69.1
41.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.9
0.67
0.9
74
36.5
Minor 5ss
36.2
-1.6
2.9
43.1
37.6
Minor BPS
47.1
-0.1
1.8
66.13
38

Associated Gene:

Gene:
TAF4
Ensembl Gene ID:
ENSAPLG00000013454
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014040
10169130 - 10206025
36896