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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10195074_10196121_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10195074 - 10196121
Intron Length:
1048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
AGATACTCAAAC
Flanking Amino Acid:
PQPYLVPFLKRSLPALRQLT
Intron Amino Acid Position:
853

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
71.6
40.9
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
89.5
0.89
0.6
88
22
Minor 5ss
39.7
-1.2
2.8
50.2
46
Minor BPS
48.3
-0.1
1.8
58.02
39.5

Associated Gene:

Gene:
TAF4
Ensembl Gene ID:
ENSAPLG00000013454
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014040
10169130 - 10206025
36896