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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10196365_10197373_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10196365 - 10197373
Intron Length:
1009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTAAG
5'SS Class:
major
3'SS Sequence:
TACTTATCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACTTATCT
Flanking Amino Acid:
VSKQGQSTPLVIQQSQKAGT
Intron Amino Acid Position:
934

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
70.8
41
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
80
0.67
0.8
74.1
35.3
Minor 5ss
34.1
-1.8
2.9
38.5
41
Minor BPS
73.7
0.82
1.7
93.25
34.8

Associated Gene:

Gene:
TAF4
Ensembl Gene ID:
ENSAPLG00000013454
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014040
10169130 - 10206025
36896