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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10198788_10199404_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10198788 - 10199404
Intron Length:
617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTTGA
5'SS Class:
strong_major
3'SS Sequence:
GTCCTGATCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTACAACT
Flanking Amino Acid:
APLQRRILEIGKKHGITEIH
Intron Amino Acid Position:
1078

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
76.7
34.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
64.2
0.32
0.9
58.1
37.1
Minor 5ss
45.7
-0.5
2.5
58.5
46
Minor BPS
60.7
0.41
1.8
84.74
35.6

Associated Gene:

Gene:
TAF4
Ensembl Gene ID:
ENSAPLG00000013454
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014040
10169130 - 10206025
36896