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Intron Name: Anas_platyrhynchos_platyrhynchos_21_10259647_10264243_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10259647 - 10264243

Intron Length:

4597

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTGGG

5'SS Class:

strong_major

3'SS Sequence:

TTGTTTGTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GGCTCAA

U12 Branch Point Sequence:

CTTGGCTCAATT

Flanking Amino Acid:

TNEGMVTVVKAVDYEMNRAF

Intron Amino Acid Position:

373

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.3

1.02

0.8

76.2

39.9

Major BPS

52.8

0.07

1.3

57.3

41.7

Major PPT

81.9

0.72

0.9

81.2

36.5

Minor 5ss

32.1

-2

3.1

40.6

45.6

Minor BPS

49.6

0.05

2.1

71.5

Associated Gene:

Gene:

CDH4

Ensembl Gene ID:

ENSAPLG00000013848

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014447

10243123 - 10420631

177509

ENSAPLT00000014450

10243190 - 10421072

177883