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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10283831_10318597_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10283831 - 10318597
Intron Length:
34767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTGCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCTTCTTTTATT
Flanking Amino Acid:
VTVAAGLDREKVQQYIVIVQ
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.7
83.9
30.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
82
0.72
0.9
73.9
41.3
Minor 5ss
38.4
-1.3
2.9
48.7
47.5
Minor BPS
69.5
0.7
1.6
83.31
38.3

Associated Gene:

Gene:
CDH4
Ensembl Gene ID:
ENSAPLG00000013848
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014450
10243190 - 10421072
177883
ENSAPLT00000014447
10243123 - 10420631
177509