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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1040373_1041687_R

Intron Information:

Intron Rank:
134781
Intron Class:
major
Intron Phase:
Intron Coordinates:
1040373 - 1041687
Intron Length:
1315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
TTTTTTCCCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCTCAAAAAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
0.9
74.8
29.6
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
83.9
0.76
0.6
78.2
30.7
Minor 5ss
31.5
-2.1
2.7
34.9
36
Minor BPS
36.3
-0.9
2.2
56.86
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019836
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028190
1039434 - 1063221
23788