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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10419974_10421032_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10419974 - 10421032
Intron Length:
1059

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAACATCA
5'SS Class:
major
3'SS Sequence:
CTCTCTGTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
GTTTCTTCCATC
Flanking Amino Acid:
LAFLLQSACQVKFNNCAGNK
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1.2
63
42.8
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
76.2
0.59
0.8
68.7
37.2
Minor 5ss
33.4
-1.9
4
48.6
47.1
Minor BPS
50.8
0.01
1.9
66.99
39.2

Associated Gene:

Gene:
CDH4
Ensembl Gene ID:
ENSAPLG00000013848
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014450
10243190 - 10421072
177883