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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10882009_10897796_R

Intron Information:

Intron Rank:
154688
Intron Class:
major
Intron Phase:
Intron Coordinates:
10882009 - 10897796
Intron Length:
15788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
CCTATGATTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
ACTCCTATGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
70.5
36.3
Major BPS
70
0.5
1
67
39.8
Major PPT
73
0.52
1
65.5
39.7
Minor 5ss
37.4
-1.4
3
44.6
45.1
Minor BPS
50.1
0.08
1.6
67.37
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030798
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043753
10881830 - 10901776
19947
ENSAPLT00000036371
10881830 - 10901169
19340