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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10936438_10936629_F

Intron Information:

Intron Rank:
144306
Intron Class:
major
Intron Phase:
Intron Coordinates:
10936438 - 10936629
Intron Length:
192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGCCTC
5'SS Class:
major
3'SS Sequence:
GTGTTTCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
AATGCCTTCATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
61.2
43.9
Major BPS
75
0.62
1.1
77.2
36
Major PPT
78.3
0.64
0.9
72.5
37.8
Minor 5ss
44.6
-0.6
3.1
65.6
39.4
Minor BPS
51.7
-0
1.9
58.61
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027805
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043633
10936333 - 10940143
3811
ENSAPLT00000021803
10936333 - 10952059
15727
ENSAPLT00000046652
10936333 - 11025216
88884