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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10936676_10938089_F

Intron Information:

Intron Rank:
144307
Intron Class:
major
Intron Phase:
Intron Coordinates:
10936676 - 10938089
Intron Length:
1414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCAAAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CTTTCCAAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
36.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
62.4
0.28
1
61.9
37.9
Minor 5ss
33
-1.9
3.3
46.8
48.5
Minor BPS
58.9
0.36
2
80.51
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027805
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045046
10935868 - 10940143
4276
ENSAPLT00000043633
10936333 - 10940143
3811
ENSAPLT00000021803
10936333 - 10952059
15727
ENSAPLT00000047369
10935868 - 10967397
31530
ENSAPLT00000046652
10936333 - 11025216
88884