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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_10938223_10951977_F

Intron Information:

Intron Rank:
144308
Intron Class:
major
Intron Phase:
Intron Coordinates:
10938223 - 10951977
Intron Length:
13755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATTC
5'SS Class:
strong_major
3'SS Sequence:
CTGAACATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
AATTCCTGAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
78.4
30.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
62.2
0.28
1
51.8
42.3
Minor 5ss
41.9
-0.9
3.2
59
45.7
Minor BPS
76
0.81
1.3
80.65
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027805
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021803
10936333 - 10952059
15727