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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11108700_11109427_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11108700 - 11109427
Intron Length:
728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
GCTTCCATGATG
Flanking Amino Acid:
IQTVEKILNQKLYDQSALEP
Intron Amino Acid Position:
702

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
83.3
0.75
0.6
82
22.8
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
55.4
0.02
1.7
60.17
42

Associated Gene:

Gene:
CDH26
Ensembl Gene ID:
ENSAPLG00000013919
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035069
11107392 - 11118090
10699
ENSAPLT00000014496
11107392 - 11119651
12260