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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11111046_11112363_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11111046 - 11112363
Intron Length:
1318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
ATTCTTTGAAAT
Flanking Amino Acid:
KSTWKLGRNFVESVELLMLR
Intron Amino Acid Position:
558

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.3
29.7
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
82.8
0.74
0.7
81.1
31
Minor 5ss
37.5
-1.4
2.9
47.5
42.3
Minor BPS
55.7
0.26
1.5
73.87
36.3

Associated Gene:

Gene:
CDH26
Ensembl Gene ID:
ENSAPLG00000013919
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035069
11107392 - 11118090
10699
ENSAPLT00000014496
11107392 - 11119651
12260