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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11117293_11117805_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11117293 - 11117805
Intron Length:
513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAACCA
5'SS Class:
major
3'SS Sequence:
CTCTTTTCAAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
CTCTTTTCAAAA
Flanking Amino Acid:
EGPFPKYAGQLFNNRSFNTS
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
58.8
40.3
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
68.4
0.41
1
71.4
32.1
Minor 5ss
30.5
-2.2
3.3
40.4
45.2
Minor BPS
49.8
-0
1.6
59.73
40.7

Associated Gene:

Gene:
CDH26
Ensembl Gene ID:
ENSAPLG00000013919
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014496
11107392 - 11119651
12260