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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11117929_11118012_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11117929 - 11118012
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTAGT
5'SS Class:
major
3'SS Sequence:
ATTTATCCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ACTTATTTATCC
Flanking Amino Acid:
RRAVQKKNTQLIDSYQLDSL
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
75.6
40
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
72.9
0.52
1
67.5
38.2
Minor 5ss
39.9
-1.1
2.5
52.3
44.2
Minor BPS
54.5
0.12
1.8
65.35
40.5

Associated Gene:

Gene:
CDH26
Ensembl Gene ID:
ENSAPLG00000013919
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014496
11107392 - 11119651
12260
ENSAPLT00000035069
11107392 - 11118090
10699