About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11125932_11126329_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11125932 - 11126329
Intron Length:
398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAATTCTG
5'SS Class:
major
3'SS Sequence:
TTGTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
ATCATTCTAACA
Flanking Amino Acid:
NQLDDNAQSKRITSVCTSLP
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.1
65.9
45.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
81.4
0.71
1
86.9
31.1
Minor 5ss
38.4
-1.3
3
51.3
45
Minor BPS
50.6
0.02
1.7
62.5
37.8

Associated Gene:

Gene:
FAM217B
Ensembl Gene ID:
ENSAPLG00000014012
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014589
11124743 - 11128016
3274