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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11126416_11126506_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11126416 - 11126506
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCAA
5'SS Class:
strong_major
3'SS Sequence:
CATATCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTCATATCT
Flanking Amino Acid:
GKNVSSASEKTSHDTQYGNQ
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
76.5
34.2
Major BPS
100
1.24
0.5
100
0
Major PPT
80.7
0.69
0.9
77.1
36.6
Minor 5ss
32.9
-2
3
40.7
45.5
Minor BPS
60.6
0.41
1.9
83.09
37.8

Associated Gene:

Gene:
FAM217B
Ensembl Gene ID:
ENSAPLG00000014012
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014589
11124743 - 11128016
3274